Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015948526.1_cds_XP_016489775.1_80264
CDS Infomation

[gene=LOC107809630] [db_xref=GeneID:107809630] [protein=probable E3 ubiquitin-protein ligase ARI9] [protein_id=XP_016489775.1] [location=join(21739..22455,23150..23922,30551..30677)] [gbkey=CDS]
Sequence

ATGGAAGTCGACGACGATCTTCACGCCCTATTCGACGAACAACGCCGTGAAATAGCCGCC
GCTGAAACCGTCGATGGCGATCTCCTCTTCGCCTTTCAACTACAAATGCAAGAGGCTATG
AGCGCTTCAAATTCAAAACCGGCCATTAACGGTGAAAGCATCATCGGATGTAACGATGTC
ACCACTCTTTTCTCCGAGGAATTATTAAACTACGAACAACAATTTCACGACCGTCAAACA
GCCGAAGCGGAGATGAAGAAAATCGAAGACGATCTCAACCGTCGAATCCACGATCAGGCC
TTCGCGCGTGAGATACAAAACGTGCCGGAGGGCGAGTGGAAAGAGACGGGGGATCATTTG
CATAGGCCGTACGGTGAGGGTTCATCGAAAGGTGTGGCCCAAAATGGGAATGAGGATTGT
TTTAGGGTTTATGTGAAGGGTTTAATGGGAGAAGAGGTTGAAGAAGAGAGTGTTGTTGTG
GTTGTGGGAACCAAACAACAACAACAACAACAACTCGCTGTGATTGGAGTTGCTGCGTGT
GATCCCAGTGGTATTTTGGTGTTTGAAGTGAGTAAGGGTTTGGGTGAAAACACTACTGAA
GTGTTGAATGATGAAATTGTGGAGCTGAAAGCGCTGATTGAAGGGCTTGATGTTGCTGTA
ATGCTGGGTTTGAAAAGGGTTAATGTTGTTTTGGATAGTCAAACTATCTTGCAATATGTT
AGGGGCAAGTTGCATCCGAGGAATGGTAATGTTGCTGCACTTGTTGAACAAGCAACTTCT
CGTCTAAGAAAATTTACAGATTGTGTACCATCTCTTGTGTCACAGAATACCGTCAACTTT
GCGATTAAACTTGCTACTGATGCAATAGTCTCTCAGGTTAGAGGACCACCAGGAAGTAGT
CTTCAAAAGAGCATCACGGAGACTTGTACTATTTGTCTGCAAGATACTGATGTAGATCAT
ATGTTTCTAATTAATGGTTGCCTGCATTATTATTGCTTTTCTTGTATGAATAAACATGTG
GAAGCTAAACTCCTTCAAGGAATGCTACCTGAATGCCCTCATGATAAATGCAAGTCTGTG
TTGAAATTAGATAACTGCAAAAAGTTCTTGATGCCCAAGCTATACGATTTGATGAATGAA
CGTGTCAAGGAAACTACTATTCCTATCACGGAAAAGATTTACTGCCCAAATTCTAAGTGT
TCTGCATTGATGTCAAAAGCTGAGGTCCAAATTTCTGCTCCAAATGTCTTTGTGGGAAAC
GAGCAAGTTGGGGCTAGAATGTGCACGAAATGCCGTCTCCATTTCTGTATCAATTGCAGA
GTTCCTTGGCATCAAAACATGACTTGCTTTGACTATAGAAAACTTAACCCTTACTTGTGC
GTAGACGATGCAAAGCTCAAGTCTCTTGCCACAAAGAGTCTTTGGCGTCAGTGTGTAAAG
TGCAACCACATAGTGTCTCTTGGCGAAGGTTGCTACCATATTTACTGCAGATGTGGTCAC
GAGTTTTGTTATACATGCGGAGCTGAGTGGAAGAACAAGAAACCAACATGTTCCTGCCCA
ATATGGGATGAGCGAAATATCATTTATGGAAATAGACCCCAACCAAGGAGAGCCTGA

Peptide Sequence

PEP ID

XP_016489775.1
PEP Infomation

PREDICTED: probable E3 ubiquitin-protein ligase ARI9 [Nicotiana tabacum]
Sequence

MEVDDDLHALFDEQRREIAAAETVDGDLLFAFQLQMQEAMSASNSKPAINGESIIGCNDV
TTLFSEELLNYEQQFHDRQTAEAEMKKIEDDLNRRIHDQAFAREIQNVPEGEWKETGDHL
HRPYGEGSSKGVAQNGNEDCFRVYVKGLMGEEVEEESVVVVVGTKQQQQQQLAVIGVAAC
DPSGILVFEVSKGLGENTTEVLNDEIVELKALIEGLDVAVMLGLKRVNVVLDSQTILQYV
RGKLHPRNGNVAALVEQATSRLRKFTDCVPSLVSQNTVNFAIKLATDAIVSQVRGPPGSS
LQKSITETCTICLQDTDVDHMFLINGCLHYYCFSCMNKHVEAKLLQGMLPECPHDKCKSV
LKLDNCKKFLMPKLYDLMNERVKETTIPITEKIYCPNSKCSALMSKAEVQISAPNVFVGN
EQVGARMCTKCRLHFCINCRVPWHQNMTCFDYRKLNPYLCVDDAKLKSLATKSLWRQCVK
CNHIVSLGEGCYHIYCRCGHEFCYTCGAEWKNKKPTCSCPIWDERNIIYGNRPQPRRA

Transcript Sequence

Gene sequence data has not been registered.